from ase import Atoms, PickleTrajectory, read from ase.optimize.lbfgs import LBFGS, LBFGSLineSearch from gpaw import GPAW, Mixer, MixerSum, ConvergenceError, PoissonSolver from gpaw.poisson import PoissonSolver from gpaw.eigensolvers.rmm_diis import RMM_DIIS ps = PoissonSolver(nn='M', relax='GS', eps=1e-9) es = RMM_DIIS(keep_htpsit=False) from gpaw.hs_operators import MatrixOperator # Makes Python traceback appear only on the root processor import sys from gpaw.mpi import world from ase.utils import devnull # if world.rank != 0: # sys.stderr = devnull a = 4.08 bulk = Atoms('Au4', positions=((0, 0 ,0), (0.5, 0.25, 0), # wrong y position (0.5, 0, 0.5), (0, 0.5, 0.5)), pbc=True) bulk.set_cell((a,a,a), scale_atoms=True) calc = GPAW(h=0.18, maxiter=200, mode = 'fd', poissonsolver = ps, nbands = 25, spinpol = False, xc = 'LDA', width = 0.01, mixer = Mixer(0.10, 5, 100.0), # mixer = MixerSum(0.10, 5, 100.0), # spinpol = True eigensolver = es, txt = 'Au_bulk.out') bulk.set_calculator(calc) # spinpol = True # magmom = 2.0 # mms = [magmom for i in range(len(bulk))] # bulk.set_initial_magnetic_memonts(mms) world.barrier() # make sure things are synchronized class OptimizerLogger: def __init__(self, atoms, basefile=None, step=0): if basefile == None: self.basefile = 'gpaw' else: self.basefile = basefile self.step = step self.calc = atoms.get_calculator() def __call__(self): filename = self.basefile + '.' + str(self.step) + '.hdf5' self.calc.write(filename) self.step = self.step + 1 savehdf5 = OptimizerLogger(bulk,'foobar') mode = 'w' traj = PickleTrajectory('qn.traj', mode, bulk) traj.post_write_attach(savehdf5, 1) relax = LBFGS(bulk, logfile = 'qn.log', trajectory = traj, restart= 'qn.pckl') relax.run(fmax=0.05, steps=3)