TAXEQ3 : Safe Taxonomic Reduction for brad.dat 23/3/2012 21:40 48 Taxa and 233 characters Terminal Taxa 1 = Megapnosaurus_kayentakae 2 = Sigilmassasaurus_brevicollis 3 = Concavenator_corcovatus 4 = Aerosteon_ricocoloradensis 5 = Australovenator_wintonensis 6 = Chilantaisaurus_tashuikouensis 7 = Fukuiraptor_kitadanensis 8 = Megaraptor_namunhuaiquii 9 = Neovenator_salerii 10 = Orkoraptor_burkei 11 = Shaochilong_maortuensis 12 = Allosaurus_fragilis 13 = Eocarcharia_dinops 14 = Acrocanthosaurus_atokensis 15 = Carcharodontosaurus 16 = Giganotosaurus_carolinii 17 = Mapusaurus_roseae 18 = Tyrannotitan_chubutensis 19 = ABELISAURIDAE 20 = Afrovenator_abakensis 21 = Baryonyx_walkeri 22 = Ceratosaurus_nasicornis 23 = Compsognathus_longipes 24 = Condorraptor_currumili 25 = Dilophosaurus_wetherilli 26 = Dubreuillosaurus_valesdunensis 27 = Eustreptospondylus_oxoniensis 28 = Guanlong_wucaii 29 = Irritator_challengeri 30 = Lourinhanosaurus_antunesi 31 = Magnosaurus_nethercombensis 32 = Marshosaurus_bicentissimus 33 = Megalosaurus_bucklandii 34 = Duriavenator_hesperis 35 = Metriacanthosaurus_parkeri 36 = Monolophosaurus_jiangi 37 = Piatnitzkysaurus_floresi 38 = Poekilopleuron_bucklandii 39 = Sinraptor_dongi 40 = Spinosaurus_aegyptiacus 41 = Streptospondylus_altdorfensis 42 = Suchomimus_tenerensis 43 = Tanycolagreus_topwilsoni 44 = Torvosaurus_tanneri 45 = Xuanhanosaurus_qilixianensis 46 = Chuandongocoelurus_primitivus 47 = Piveteausaurus_divesensis 48 = Kelmayisaurus Multistate characters are mixed ordered and unordered Original Matrix 1. 20?101100111100?0??0????000200?01021200?10?0000?1011100??0010002000000000?? 010?1??1?010???000?00?100?0?11001000001???0?00???00?10???????0??010110?0??? ???0?00001?0?00001?01010?011?0??000000100001?01101000000132?00??000???00?0? 00000000 2. ??????????????????????????????????????????????????????????????????????????? ???????????????????????????????10111010???????????????????????????????????? ??????????????????????????????????????????????????????????????????????????? ???0???? 3. ????????10?1????1??????????111010110210?100111??02?????????0??????????????? ?0??????????01?020?21?1????????10????1000??0001?00??001010010210??0000?1?00 00???????0101?1??10101?????01???1?112011?0?????????11??0??3?01??0?0?000???0 ?000???? 4. ???????????????????????????????????????????0000000???10?00????????????????? ????????????01?0?0?10??????????102120101011000001???21???????10012????????? ??????????10121201010122101?????????????????????010101210?120??1111??0????? 11?0??0? 5. ????????????????????100?????0?????????????????????????????????????????????? ?000000?????01?0?0?00???????????????????????????????????????????????????100 00?011???0??????????????????????????2012101111000101012102120?1???1?001?111 ?10???11 6. ??????????????????????????????????????????????????????????????????????????? ??????????????????????????????????????????????????????????????????011001??? ????????10??1212???1????????????????2????11??1000??101?1??1??11???????0?1?? ??0????1 7. ????????????????????1000????0?????????????????????????????????????????????? ?????????0??0010?00?0???????????0????1??????????????????????????120010??100 ????????0?????1????1????????????????101210111100010101??????011??0???0101?1 ?10???1? 8. ??????????????????????????????????????????????????????????????????????????? ????????????????????????????????0212?1?1??1??????????1???1???11?12???????00 0010111000??????????012?????????????????????????????????????????11??1?1?1?1 ???????? 9. 10??0000100110210100100110011101????????????????????????????0?????????????? 10010002?0100100?0010????111001102120111010000001?0?2010110101??12????????? ?????????0??12120101012210101011?11120?110111100010101230111?1110010?000?1? ??0000?1 10. ???????????????????????????????????????????0000000???????0????????????????? ????????????01?0?00?0??????????????????1?????????????1????????????????????? ????????????????????????????????????????????????01010???????????1????1????? 1??????? 11. ??????000000210101001000????0??1?????????????????????00?00????10100110110?? ??????????????????????????100?110?????????????????????????????????????????? ???????????????????????????????????????????????????????????????????????1??? ???????? 12. ?011100010011021?10010000001010110?0131100101000001100010?00000101000111000 1010001210100110200101111010001101110100000000001000001011?1021012100011100 001001110011111201010121101001110100101110111000010101000111011000000000000 00000001 13. ???????0001111212??01000???????????????????11000?1????????????????????????? ??????????1?01?????10?????????????????????????????????????????????????????? ???????????????????????????????????????????????????????????????????1?0?0??? ???????? 14. 10101?000001112121001000100000?02111121?00111120021111000100000000011011000 12011001001001?020?1001101100?10021201?1?10120001?1?0010?1?1021012110011001 1111010100?11?????????221010101?0110201110111000010101130212011000?10001000 ?000??01 15. ?????0?0000021010100100010001111?11??21??0?11120??????????0011101??1??11011 ?????0????0?0010?0021?????????0?0??1?1??1?0??????????1????????????????????? ????????????????????????????????????2??1201111?0??????????3????????1?0?1??? ??0????? 16. 00????00?000?10101?0100010002111??1?12110011112002???10?00?011101??10?11011 ?2101001?0000010?0021?1??11000000212010101012000?0??20?0?10?0???1?????????? ?????????0??1112010101221010101?01102011?01???0?010101230212???0???????1??? ??0000?1 17. ???????0000021010100100010002111?1????1100111120?2???10?0000??????????????? ?2101?0???000010?002101?????????02?2?1?1?1012000??1?20?0?1???21???11?011??? ???1?????0?????????1???????01?1101?02??1101?1?0001010123021?0110???????10?? ?000??01 18. ????????????????????1?0??????????1????????????????????????????????????????? ?2?01?0?????0??0?0020???????????0212?1?1?1012000??0???????????1?1?????????? ?????????0??????????0?2???????11????20?11011100??????1???2?????00????0????? ??00???1 19. 001?000000002000?1001010??0010??2011000??0110020020110100010001?0000?00101? 0010000110?0001010000010001?00010210000?01000100010000?21100110100111010000 00?0100000?0100001000020?0100001001101100001101011100120??32000000000000000 00011100 20. ???????0101110?1?1000000?????????01112100000001110?0101?1?000?????????????? ??????????0?011020000????00011100?11?1?010?0?000???????011100??????1?0????? ??1001??00?110111?0?0?20??1101?10110110100100000??00?1101001?1?00?010000000 ?000???0 21. 21010?1121???????1110100?11?0????0011310010??????????00?0??????000100?111?0 ?1010113?12100?1?1100011??11101101110100101020110???00???01?01??10?11100011 00??????1?????11?1010??????0?00100??111???100001?????????01????0?0?010?0000 ???0???0 22. 001110000001201010001000111000?01011131000000000100110110100000100000001010 000000100010001010000000001?0000020000100000210001??10020100110101011000??? ??001000?1??100001?01010?010?001001101100001101011100110033000000?00?0?0?00 00011100 23. 10???100000?002?0??000??000000?00010100?0??000?200?????0?0?10?0???????????? ?0?00??1?01001?02000010?0?1?????1?110100???000?000???00001?011111?01????100 0??00?0100?00?13????01?101?1??100?1????1?1??????0????1??????1???0??0?100??? 01?0???? 24. ??????????????????????????????????????????????????????????????????????????? ????????????0100?0010??????????0011110?01010?000100?10?2?11???????????????? ?????????0?1?0110??100?????0???100???????010100001000??????????00????00??0? ???000?? 25. 201?0010011110000000?10????20100201?100?101000?0101110000010??02000010001?0 01010011?101000010000?1?000?11000?00000000001000000?00020100000101001000100 100010000110000001100000?00?0001??11011000000000000000000?20000000000000000 00000000 26. 1?????001011201001000000?????????011????00??0?111000????????00?0001011010?0 ?101111100000110200001??????????01?1???0??????0?0???00?0?1??1?0???????????? ???????????????????????????????????????1??0?0?0??????1??000????????1?0?00?? ???????? 27. 2?????001100??11?1000000??????????11011000000011?000101?0??00??0001010010?0 ?1011111?0000?00?0000?????1?1111011101?000101000000?00?0?????1????012000??? ???????????0?010110?0?20?0?101?001??111100100000000?0100000?01000?00?000?0? ?0000000 28. 0??00?001001102?0????????10000?02110102?00?000??00100??2??010?0???????????? ?0?01??110000??020??0?01??????????1?00?????00???0????0?1?????2????000???100 0?1011010??21213??0?00?10??0?10?0?1????21????0??0???????0???1?1?0?0?0000000 01100001 29. ??????????0??02?0?11????11?000?01001130?010??0???0??0??2?000?00000100011100 ????????????1?0121101?110?????????????????????????????????????????????????? ???????????????????????????????????????????????????????????????????????0??? ???????? 30. ??????????????????????????????????????????????????????????????????????????? ????????????????????????????????01?1??000??0?000?0?10010?1??1?????????????? ?????????0??1111?001?0???????01100??10111010??0?000?0110011????00?0???????? ?00000?1 31. ????????????????????00????????????????????????????????????????????????????? ?1011?1?????0?00?0000???????????0??????0?????0????????????????????????????? ??????????????????????????????????????????10000?000??110?????????????????0? ?0?????? 32. 00???0000001001100000000???00????0??????????0??1100010000?0?00000000?11100? ???????1000?0??0?0??0????10011110111110000101000?????????????1?????0?0????? ?????????0?????1???????????????????????????????????????????????00?01?0?0??? 0??0???? 33. ???????00001??11?1000011?????????1????????????????????????????????????????? ?000011???000110?0010?0?0???????01?1?1?01010200000010010?????00?00?121??000 ?????????001101110010??0?00101?1111011010010000001001100?????10000010001?00 ?00000?0 34. 10???10010?1?01101000000??????????????????????????????????????????????????? ?001111?00000100?0000?????????????????????????????????????????????????????? ???????????????????????????????????????????????????????????????????0???0??? ???????? 35. ??????????????????????????????????????????????????????????????????????????? ????????????????????????????????0??1???0?00020001???00?0??????????????????? ?????????0????110?01??2???10?????0??1??1?0???0000?001??????????00?0???????? ??00???1 36. 00111?0010001???0??000??1100110121111?0?0000000?111?1001?01000000000?01100? ?1000?11?0010??020?101010?1???11011101?010?010000???00????????????????????? ?????????00110110?1010?????00?0100?0???????????????????????????00?0??0?0??? 0??000?? 37. ???????00?010?11?1000010????????????????????????????????????0???00001011000 ?010?01???1?0110?0010????0001111011??0?010101000?00?10???????10?120010101?0 ??1??????0?1?0110?010020?000001100101?1100100000010011000111?10000000000?00 ?0000000 38. ??????????????????????????????????????????????????????????????????????????? ???????????????????????????????????????????????????????011?11??????1?011000 01?001???????????????????????????????????????????????110?1??0?????????????0 ?0?????? 39. 0010100000010121100000?0000001012110221100101000010110010000010111000111000 10001?1110100?1020010010111011010111011010102000100?001211?1?1100?????????? ???0??10?011101100010020?0100011101110111011100000001100011001100000?00000? 00000001 40. 21101?112100000????1?1????????????????????????????????????????????????????? ?1010??3?1??1?0121101??????????10????1??????2?000?????????????????????????? ???????????????????????????????????????????????????????????????????????0??? ???0???? 41. ??????????????????????????????????????????????????????????????????????????? ????????????????????????????????0??1?1?00????000??????????????????????????? ??????????????????????20?00???????????????????00?????110????0??0??????????? ?0?0??0? 42. 21010?112101200?0?110100????????????????????0?????????????????????????????? ?10????3?121000121100?????1??0?00111?1?0101020110????0?0?010010?10011100011 00??????1001101??1?10??????0??11??1?1?11101000010?010101101????0000010?0000 ??00??00 43. 0?????00?????????????????0??00?0??2?202?000?0?1201???00?0?0???????????????? ???????110??0??0?00?00????1011110??1?0?0?00000000????0?111??120?1101010?1?0 101011110?????????????21011?????????1?11110110000101010201121110?0??0?10100 ?110??01 44. 101?00001000201001001001?????????011011001000011?0??101?1000??????????????? ?0010??1?0000110?0010????0110010011101?11010100000??0110?110000000?12000000 00?0110?10?0101110010020?001010001001?0100100000000101200002010000010001000 0000??0? 45. ??????????????????????????????????????????????????????????????????????????? ????????????????????????????????0??????010?0??000????????????????2?1??10100 0010?1000??????????????????????????????????????????????????1?????0??0???0?0 ???0???? 46. ??????????????????????????????????????????????????????????????????????????? ????????????????????????????????0??????0??????????????????????????????????? ?????????0???0110?10?0??????????????0?1100001000000??101122?01????0???0??0? ??0???00 47. ????????????????????????????????????????????????????????????000?0010100110? ??????????????????????????????????????????????????????????????????????????? ??????????????????????????????????????????????????????????????????????????? ???????? 48. ????????10???????1??10?0??????????????????????????????????????????????????? ?000101?????0??0????0?????????????????????????????????????????????????????? ???????????????????????????????????????????????????????????????????1?0?1??? ???????? -------------------------------------------------------------------------------- Type:UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU Type:UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU Type:UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU Type:UUUUUUUU Dispersion of Missing entries across Characters 10 1 character 11 1 character 12 2 characters 13 1 character 16 3 characters 17 2 characters 18 1 character 19 7 characters 20 10 characters 21 6 characters 22 8 characters 23 6 characters 24 17 characters 25 12 characters 26 10 characters 27 12 characters 28 13 characters 29 15 characters 30 20 characters 31 15 characters 32 19 characters 33 12 characters 34 5 characters 35 7 characters 36 10 characters 37 7 characters 38 5 characters 39 2 characters 40 3 characters 44 1 character 6557 missing entries (58.628%) Averages 136.604 per taxon 28.142 per character Uninformative between-taxon pairwise comparisons = 18345 (2697.794%) ============================================================== Taxonomic Equivalence and Scope for Safe Taxonomic Reduction ============================================================== Index ? % (n) : Equivalents -------------------------------------------------------------- 1 29.18% (68) : None 2 96.14% (224) : 3D 5D 6D 7D 10D 11D 12E 13D 15D 21E 26D 27D 29D 30D 31D 33D 34D 35D 36D 38D 40D 41D 45D 46D 47D 48D 3 56.22% (131) : 2D 47D 4 65.67% (153) : 6D 47D 48D 5 73.39% (171) : 2D 11D 47D 6 86.70% (202) : 2D 4D 10D 11D 13D 29D 34D 40D 47D 48D 7 75.54% (176) : 2D 47D 8 85.41% (199) : 10D 11D 13D 29D 34D 40D 47D 48D 9 35.62% (83) : 47D 10 89.70% (209) : 2D 6D 8D 11D 34D 38D 47D 11 81.97% (191) : 2D 5D 6D 8D 10D 18D 30D 35D 38D 41D 45D 46D 12 2.15% (5) : 2C 13 87.55% (204) : 2D 6D 8D 24D 30D 35D 38D 41D 45D 46D 47D 14 11.59% (27) : None 15 65.67% (153) : 2D 38D 45D 16 32.62% (76) : 17D 17 46.78% (109) : 16D 47D 18 77.68% (181) : 11D 47D 19 8.58% (20) : None 20 40.77% (95) : 45D 47D 21 40.77% (95) : 2C 22 8.15% (19) : None 23 47.21% (110) : 47D 24 72.53% (169) : 13D 47D 48D 25 9.87% (23) : None 26 61.80% (144) : 2D 41D 45D 27 32.62% (76) : 2D 28 49.36% (115) : 47D 29 76.39% (178) : 2D 6D 8D 30D 35D 38D 41D 45D 46D 30 74.25% (173) : 2D 11D 13D 29D 31D 32D 34D 38D 40D 41D 47D 48D 31 87.12% (203) : 2D 30D 32D 35D 38D 41D 45D 47D 32 60.09% (140) : 30D 31D 41D 46D 33 45.92% (107) : 2D 47D 34 83.26% (194) : 2D 6D 8D 10D 30D 35D 38D 41D 45D 46D 47D 35 82.83% (193) : 2D 11D 13D 29D 31D 34D 38D 47D 48D 36 45.49% (106) : 2D 38D 45D 46D 37 38.63% (90) : None 38 89.70% (209) : 2D 10D 11D 13D 15D 29D 30D 31D 34D 35D 36D 40D 41D 47D 48D 39 10.73% (25) : None 40 83.26% (194) : 2D 6D 8D 30D 38D 41D 45D 46D 47D 41 90.56% (211) : 2D 11D 13D 26D 29D 30D 31D 32D 34D 38D 40D 47D 48D 42 45.92% (107) : 47D 43 48.93% (114) : 47D 44 21.89% (51) : 47D 45 87.55% (204) : 2D 11D 13D 15D 20D 26D 29D 31D 34D 36D 40D 46D 47D 48D 46 83.69% (195) : 2D 11D 13D 29D 32D 34D 36D 40D 45D 47D 48D 47 94.42% (220) : 2D 3D 4D 5D 6D 7D 8D 9D 10D 13D 17D 18D 20D 23D 24D 28D 30D 31D 33D 34D 35D 38D 40D 41D 42D 43D 44D 45D 46D 48D 48 92.27% (215) : 2D 4D 6D 8D 24D 30D 35D 38D 41D 45D 46D 47D ============================================================== Recoded T22 C83 -> ? Recoded T1 C92 -> ? Recoded T1 C109 -> ? Recoded T28 C162 -> ? Recoded T25 C173 -> ? Recoded T15 C191 -> ? Recoded T43 C206 -> ? No additional Uninformative data found in TAXEQ analysis KEY to Taxonomic Equivalence A - Actual equivalents (symmetric) can be safely deleted if Index is retained B - Potential equivalents (symmetric) can be safely deleted if Index is retained C - Potential equivalents (asymmetric all one way) can be safely deleted if Index is retained D - Potential equivalents (asymmetric both ways) cannot be safely deleted E - Potential equivalents (asymmetric all one way) Index can be safely deleted if equivalent is retained * - Taxon must originate from same node as Index taxon in any MPT (assuming no arbitrary resolutions) ! - Taxon has no informative data