.PHONY: naive-word-count #because there is a script with that name in the dir

meditor-line-count:
	@echo Counting meditor Java lines...
	find /home/bsm/sideris/biomap/meditor/org/biomap/ -iname "*.java" | xargs --replace=xxx cat xxx | wc -l > meditor_line_count

paper: meditor-line-count
	latex paper.tex
	bibtex paper
	latex paper.tex
	latex paper.tex
	dvips paper.dvi -o paper.ps

paper-pdf: paper
	dvipdfm -o paper.pdf paper.dvi


report: meditor-line-count
	latex report.tex
	bibtex report
	latex report.tex
	latex report.tex
	dvips report.dvi -o report.ps

thesis:
	echo $(TEXINPUTS)
ifeq ($(LABELS),1)
	@echo Rendering with labels...
	echo '\usepackage{showlabels} \renewcommand{\showlabelfont}{\small}' > labels.switch
endif
	latex thesis.tex
#	bibtex thesis
	latex thesis.tex
	latex thesis.tex
	dvips -o thesis.ps thesis.dvi
ifeq ($(LABELS),1)
	echo '' > labels.switch
endif

thesis-labels:
	$(MAKE) thesis LABELS=1
	
thesis-pdf:
#	pdflatex thesis.tex
	dvipdf thesis.dvi thesis.pdf

report-pdf: report
	dvipdfm report.dvi report.pdf

naive-word-count:
	@./naive-word-count

word-count: thesis-pdf
	#@echo Tranfer report: `detex report.tex | wc -w` words
	#@echo Paper: `detex paper.tex | wc -w` words
	@echo Thesis word count: `pdftotext thesis.pdf - | wc -w` words

clean:
	rm -rf *.dvi *.log *.aux *.toc *.bbl *.blg *~ *.ps *.pdf *.lof