============================================================================= == Running OSCAR install_cluster script Wed Sep 26 13:48:17 PDT 2007 ============================================================================= --> Checking if this is a supported platform --> Running: "cd /opt/oscar-5.0/scripts && ./wizard_prep" ============================================================================= == Running OSCAR wizard_prep script ============================================================================= --> Bootstrapping OSCAR smart package manager --> Checking OSCAR repositories existence. smartly removing: tftp-server.i?86,lam smartly installing: dhcp,gd,nfs-utils,openssh,openssh-clients,openssh-server,openssl,tcpdump,xinetd,httpd,php,expat,python,zlib,zlib-devel,shadow-utils,libcap,ntp Cleaning up Everything 0 headers removed 0 packages removed 0 metadata files removed 0 cache files removed 0 cache files removed --> Installing OSCAR wizard prerequisites smartly installing: perl-XML-Parser,perl-XML-Simple,mysql,perl-DBD-MySQL,perl-DBI,mysql-server,perl-HTML-Tree,perl-Tk,perl-Qt --> Installing wizard prereq share/prereqs/perl-XML-Parser --> Successfully installed prereq share/prereqs/perl-XML-Parser --> Installing wizard prereq share/prereqs/perl-XML-Simple --> Successfully installed prereq share/prereqs/perl-XML-Simple --> Installing wizard prereq packages/oda --> Running prereq setup script for packages/oda --> Checking status of MySQL server mysqld 1 Stopping MySQL: [FAILED] Initializing MySQL database: [ OK ] Starting MySQL: [ OK ] --> Successfully installed prereq packages/oda --> Installing wizard prereq share/prereqs/perl-HTML-Tree --> Successfully installed prereq share/prereqs/perl-HTML-Tree --> Installing wizard prereq share/prereqs/perl-Tk --> Successfully installed prereq share/prereqs/perl-Tk --> Installing wizard prereq share/prereqs/perl-Qt --> Successfully installed prereq share/prereqs/perl-Qt --> Locating _all_ OSCAR packages --> Running package setup scripts for ALL packages --> About to run /opt/oscar-5.0/packages/disable-services/scripts/setup for disable-services Created: /opt/oscar-5.0/packages/disable-services/scripts/post_client_rpm_install --> About to run /opt/oscar-5.0/packages/oda/scripts/setup for oda This mysql has been already setup InnoDB table type --> Checking status of MySQL server mysqld 0 --> mysqld already running --> Successfully ran package setup scripts --> Making sure there is an ODA database password Checking for ODA database password file ... not found. Generating a random password for the OSCAR database. saved. --> Initializing ODA database from package config.xml files Starting the mysql database server ... /etc/init.d/mysqld start Starting MySQL: [ OK ] Making sure that the mysql database server starts on subsequent boots ... chkconfig mysqld on Creating the OSCAR database ... ... OSCAR database successfully created. Searching these directories for packages: /opt/oscar-5.0/packages /var/lib/oscar/packages Checking for database existence of node oscar_server ... Updating the hostname field in the oscar_server node to ... Updating the dns_domain field in the oscar_server node to <***.edu> Checking for existence of node group oscar_clients ... Checking for existence of node group all ... Creating node group all ... Checking for existence of node group Default_node ... Creating node group Default_node ... Processing /opt/oscar-5.0/packages/sync_files/config.xml for package sync_files ... Writing a new Packages record for package sync_files Processing /opt/oscar-5.0/packages/c3/config.xml for package c3 ... Writing a new Packages record for package c3 Processing /opt/oscar-5.0/packages/oda/config.xml for package oda ... Writing a new Packages record for package oda Processing /opt/oscar-5.0/packages/lam/config.xml for package lam ... Writing a new Packages record for package lam Processing /opt/oscar-5.0/packages/apitest/config.xml for package apitest ... Writing a new Packages record for package apitest Processing /opt/oscar-5.0/packages/disable-services/config.xml for package disable-services ... Writing a new Packages record for package disable-services Processing /opt/oscar-5.0/packages/torque/config.xml for package torque ... Writing a new Packages record for package torque Processing /opt/oscar-5.0/packages/openmpi/config.xml for package openmpi ... Writing a new Packages record for package openmpi Processing /opt/oscar-5.0/packages/pvm/config.xml for package pvm ... Writing a new Packages record for package pvm Processing /opt/oscar-5.0/packages/maui/config.xml for package maui ... Writing a new Packages record for package maui Processing /opt/oscar-5.0/packages/loghost/config.xml for package loghost ... Writing a new Packages record for package loghost Processing /opt/oscar-5.0/packages/ntpconfig/config.xml for package ntpconfig ... Writing a new Packages record for package ntpconfig Processing /opt/oscar-5.0/packages/sge/config.xml for package sge ... Writing a new Packages record for package sge Processing /opt/oscar-5.0/packages/sc3/config.xml for package sc3 ... Writing a new Packages record for package sc3 Processing /opt/oscar-5.0/packages/mta-config/config.xml for package mta-config ... Writing a new Packages record for package mta-config Processing /opt/oscar-5.0/packages/pfilter/config.xml for package pfilter ... Writing a new Packages record for package pfilter Processing /opt/oscar-5.0/packages/opium/config.xml for package opium ... Writing a new Packages record for package opium Processing /opt/oscar-5.0/packages/ganglia/config.xml for package ganglia ... Writing a new Packages record for package ganglia Processing /opt/oscar-5.0/packages/sis/config.xml for package sis ... Writing a new Packages record for package sis Processing /opt/oscar-5.0/packages/yume/config.xml for package yume ... Writing a new Packages record for package yume Processing /opt/oscar-5.0/packages/switcher/config.xml for package switcher ... Writing a new Packages record for package switcher Processing /opt/oscar-5.0/packages/base/config.xml for package base ... Writing a new Packages record for package base Processing /opt/oscar-5.0/packages/networking/config.xml for package networking ... Writing a new Packages record for package networking Processing /opt/oscar-5.0/packages/mpich/config.xml for package mpich ... Writing a new Packages record for package mpich Processing /opt/oscar-5.0/packages/netbootmgr/config.xml for package netbootmgr ... Writing a new Packages record for package netbootmgr Checking for existence of package set --> Identified core packages: sync_files c3 oda apitest sc3 sis yume switcher base --> Installing server core packages --> Successfully installed server core RPMs Updating the status of core packages from installable to installed --> Done marking installed bits in ODA --> Running post_server_install scripts for server core packages [sis] Setting default installation mode to: systemimager-rsync Stopping rsync daemon for systemimager: rsync. Starting rsync daemon for systemimager: rsync. [sis] Enabling systemimager-server-rsyncd Stopping SystemImager's installation monitoring: si_monitor... stopped. Starting SystemImager's installation monitoring: si_monitor... ok. [sis] Enabling systemimager-server-monitord --> Successfully ran server core package post_server_install scripts --> Preparing for httpd export: /tftpboot/distro/redhat-el-ws-4-i386 /tftpboot/oscar/common-rpms,/tftpboot/oscar/rhel-4-i386 Exporting /tftpboot/distro/redhat-el-ws-4-i386 through httpd, http://oscarproto1.***.edu/repo/tftpboot/distro/redhat-el-ws-4-i386 Exporting /tftpboot/oscar/common-rpms through httpd, http://oscarproto1.***.edu/repo/tftpboot/oscar/common-rpms Exporting /tftpboot/oscar/rhel-4-i386 through httpd, http://oscarproto1.***.edu/repo/tftpboot/oscar/rhel-4-i386 Restarting httpd Stopping httpd: [FAILED] Starting httpd: [ OK ] --> Successfully ran OSCAR wizard_prep script --> Successfully ran wizard_prep ============================================================================= == Prerequisites installed ============================================================================= --> OSCAR version: 5.0 --> Command line invocation: ./install_cluster eth1 --> Hostname: oscarproto1 --> DNS domain name: ***.edu --> Network interface: eth1 --> Linux distribution: redhat-el-ws 4 --> Kernel version: 2.6.9-55.ELsmp --> Architecture: i386 --> Running in directory: /opt/oscar-5.0 --> PATH: /usr/kerberos/sbin:/usr/kerberos/bin:/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/X11R6/bin:/root/bin:/bin:/usr/bin:/sbin:/usr/sbin:/usr/local/bin:/usr/local/sbin --> Running: "./oscar_wizard install" Building repositories with binary packages from the OSCAR tree /opt/oscar-5.0 Copying packages ... from /opt/oscar-5.0/share/prereqs from /opt/oscar-5.0/packages from /var/lib/oscar/packages cp: cannot stat `/var/lib/oscar/packages/*/distro/common-rpms/*.rpm': No such file or directory Creating repository metadata Creating repodata cache for /tftpboot/oscar/common-rpms 43/43 - packman-depman-rpms-2.8-1.noarch.rpm Saving Primary metadata Saving file lists metadata Saving other metadata Building repositories with binary packages from the OSCAR tree /opt/oscar-5.0 Copying packages ... from /opt/oscar-5.0/share/prereqs cp: cannot stat `/opt/oscar-5.0/share/prereqs/*/distro/rhel4-i386/*.rpm': No such file or directory from /opt/oscar-5.0/packages from /var/lib/oscar/packages cp: cannot stat `/var/lib/oscar/packages/*/distro/rhel4-i386/*.rpm': No such file or directory Creating repository metadata Creating repodata cache for /tftpboot/oscar/rhel-4-i386 37/37 - perl-Tk-804.026-1.oscar.i686.rpm Saving Primary metadata Saving file lists metadata Saving other metadata ============================================================================= == Running step 2 of the OSCAR wizard: Configure selected OSCAR packages ============================================================================= --> About to run /opt/oscar-5.0/packages/switcher/scripts/pre_configure for switcher --> About to run /opt/oscar-5.0/packages/switcher/scripts/post_configure for switcher Setting default for tag mpi ("lam-7.1.2") Tag "mpi" does not seem to exist yet. Skipping. --> Step 2: Completed successfully ============================================================================= == Running step 4 of the OSCAR wizard: Build OSCAR client image ============================================================================= --> Step 4: Identified distro of clients: rhel 4 --> Step 4: distro repo: /tftpboot/distro/redhat-el-ws-4-i386 --> Step 4: oscar repo: /tftpboot/oscar/common-rpms,/tftpboot/oscar/rhel-4-i386 --> Step 4: Using RPM list: /opt/oscar-5.0/oscarsamples/rhel-4-i386.rpmlist Executing command: mksiimage -A --name oscarimage --location /tftpboot/oscar/common-rpms,/tftpboot/oscar/rhel-4-i386,/tftpboot/distro/redhat-el-ws-4-i386 --filename /opt/oscar-5.0/oscarsamples/rhel-4-i386.rpmlist --arch i686 --path /var/lib/systemimager/images/oscarimage --filename=/tmp/oscar-install-rpmlist.19360 Image build finished. Added Disk Table for oscarimage based on /opt/oscar-5.0/oscarsamples/scsi.disk Use of uninitialized value in pattern match (m//) at /usr/lib/systemimager/perl/SystemImager/Server.pm line 679, <$TEMPLATE> line 165. Use of uninitialized value in pattern match (m//) at /usr/lib/systemimager/perl/SystemImager/Server.pm line 679, <$TEMPLATE> line 165. Use of uninitialized value in pattern match (m//) at /usr/lib/systemimager/perl/SystemImager/Server.pm line 679, <$TEMPLATE> line 165. Ran si_mkautoinstallscript --> Step 4: Running: ./post_rpm_install oscarimage eth1 --> post_rpm_install: Making sure /dev/null is r/w for all --> post_rpm_install: Syncing system files --> post_rpm_install: Syncing user files --> post_rpm_install: Running ssh setup checking for host key file /etc/ssh/ssh_host_key ... checking for host key file /etc/ssh/ssh_host_dsa_key ... checking configuration file ssh_config ... turning on ForwardX11 parameter in configuration file ssh_config ... cp -fp ssh_config ssh_config.pre_ssh_install ... by adding a line turning off StrictHostKeyChecking parameter in configuration file ssh_config ... ... by adding a line turning off UsePrivilegedPort parameter in configuration file ssh_config ... ... by adding a line checking configuration file sshd_config ... turning on IgnoreRhosts parameter in configuration file sshd_config ... cp -fp sshd_config sshd_config.pre_ssh_install ... by adding a line turning on RhostsRSAAuthentication parameter in configuration file sshd_config ... ... by adding a line turning on RSAAuthentication parameter in configuration file sshd_config ... ... by adding a line setting up user root on this machine the home directory for user root is /root cd /root ssh-keygen -t rsa -N '' -f /root/.ssh/id_rsa Generating public/private rsa key pair. Your identification has been saved in /root/.ssh/id_rsa. Your public key has been saved in /root/.ssh/id_rsa.pub. The key fingerprint is: 12:b8:7a:45:09:96:d8:d7:52:a3:8e:38:4b:64:51:2a root@oscarproto1.***.edu echo ssh-rsa AAAAB3NzaC1yc2EAAAABIwAAAIEA6VMk69mQuPzoMqFQtcxGhRWxn9cOfAISqcFOibIhQXmtYdujVtwo3pWvGSJL8973vsXHJ6RySViKpkkT2tQapIyLp3XKM3ADoUmWXTZxBgfP4iNQ7UyevSspzXAZyRWpY5xtMSWsnlRgIDVYpWHXZIWcgdAkAIWKkHcys0fMUCc= root@oscarproto1.***.edu >> /root/.ssh/authorized_keys2 ssh-keygen -t dsa -N '' -f /root/.ssh/id_dsa Generating public/private dsa key pair. Your identification has been saved in /root/.ssh/id_dsa. Your public key has been saved in /root/.ssh/id_dsa.pub. The key fingerprint is: 9e:20:96:6e:90:a2:d9:12:26:e7:bd:19:7d:33:70:2a root@oscarproto1.***.edu echo ssh-dss 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 root@oscarproto1.***.edu >> /root/.ssh/authorized_keys2 ssh-keygen -t rsa1 -N '' -f /root/.ssh/identity Generating public/private rsa1 key pair. Your identification has been saved in /root/.ssh/identity. Your public key has been saved in /root/.ssh/identity.pub. The key fingerprint is: ee:3a:45:5c:9c:bd:f1:47:f8:a8:89:e9:4c:10:a4:64 root@oscarproto1.***.edu echo 1024 35 134829611105241551672212837101861889182592582850904057844768254307334580258780446829889527503114239666883317245107738449188680492234658135569042789626617962596701508463007023509114558904283279014259797975463344910069316172567943050576772075872022034560320045967650630347411783483520105623225458693012378092827 root@oscarproto1.***.edu >> /root/.ssh/authorized_keys chmod 600 /root/.ssh/authorized_keys /root/.ssh/authorized_keys2 checking/updating image /var/lib/systemimager/images/oscarimage ... cp -fpr /etc/ssh /var/lib/systemimager/images/oscarimage/etc copying ssh files for root to image /var/lib/systemimager/images/oscarimage cp -fpr /root/.ssh /var/lib/systemimager/images/oscarimage/root --> post_rpm_install: Running OSCAR package post_rpm_install scripts --> About to run /opt/oscar-5.0/packages/sync_files/scripts/post_rpm_nochroot for sync_files Created templates for image oscarimage in /opt/sync_files/templates/image/oscarimage Make sure these files do not contain any user accounts. Only system account IDs should be included! --> About to run /opt/oscar-5.0/packages/disable-services/scripts/post_client_rpm_install for disable-services Disabled kudzu in client image Removed in client image: /etc/cron.daily/slocate.cron --> About to run /opt/oscar-5.0/packages/ntpconfig/scripts/post_rpm_install for ntpconfig --> About to run /opt/oscar-5.0/packages/sge/scripts/post_rpm_nochroot for sge cp: cannot stat `/opt/sge/default': No such file or directory Failed to copy directory /opt/sge/default to /var/lib/systemimager/images/oscarimage//opt/sge at /opt/oscar-5.0/packages/sge/scripts/post_rpm_nochroot line 43 Script /opt/oscar-5.0/packages/sge/scripts/post_rpm_nochroot exitted badly with exit code '1' at ./post_rpm_install line 85 Couldn't run post_rpm_nochroot for sge at ./post_rpm_install line 86 --> About to run /opt/oscar-5.0/packages/ganglia/scripts/post_rpm_nochroot for ganglia configuring gmond for image=oscarimage using per image config /opt/oscar-5.0/packages/ganglia/.configs/oscarimage/configurator.html $VAR1 = 'udp_recv_channel__mcast_if'; $VAR2 = 'eth1'; $VAR3 = 'udp_recv_channel__port'; $VAR4 = '8649'; $VAR5 = 'udp_send_channel__mcast_if'; $VAR6 = 'eth1'; $VAR7 = 'cluster__name'; $VAR8 = 'OSCAR Proteome Cluster'; $VAR9 = 'udp_send_channel__port'; $VAR10 = '8649'; editing /var/lib/systemimager/images/oscarimage/etc/gmond.conf [ganglia] Changed line: name = "OSCAR Proteome Cluster" [ganglia] Changed line: owner = "Medicinal Chemistry Lab" [ganglia] Changed line: port = 8649 [ganglia] Changed line: port = 8649 --> About to run /opt/oscar-5.0/packages/sis/scripts/post_rpm_nochroot for sis configuring sis for image=oscarimage --> About to run /opt/oscar-5.0/packages/base/scripts/post_rpm_nochroot for base There were errors running post_rpm_install scripts. Please check your logs. at ./post_rpm_install line 91 at /usr/lib/systeminstaller/SystemInstaller/Tk/Image.pm line 485 Couldn't run postinstall at /usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi/Tk.pm line 247 Stopping rsync daemon for systemimager: rsync. Starting rsync daemon for systemimager: rsync.