$cat build.xml 
<!-- =======================================================================

   GridSphere 3.0.8 generated build file

Notes:
   This is a build file for use with the Ant build tool.

Prerequisites:

   jakarta-ant from http://jakarta.apache.org

Build Instructions:
   To build, invoke "ant"

Copyright:
  2002-2007

- $Id: build.project.xml 6292 2007-06-26 09:08:10Z wehrens $

============================================================================ -->

<project name="bioportlets" default="help" basedir=".">

    <property file="build.properties"/>
    <property file="${gridsphere.home}/build.properties"/>

    <taskdef resource="net/sf/antcontrib/antcontrib.properties">
        <classpath>
            <pathelement location="${gridsphere.home}/lib/ant-contrib-0.3.jar"/>
        </classpath>
    </taskdef>

    <property name="optimize" value="false"/>
    <property name="debug" value="on"/>
    <property name="deprecation" value="true"/>

    <property name="project" value="${project.title} ${project.version}"/>
    <property name="project.api" value="${project.title} API ${project.version}"/>
    <property name="spring.lib.dir" value="webapp/WEB-INF/lib"/>
    <property name="spring.dtd.dir" value="webapp/WEB-INF/dtd"/>
    <property name="spring.tld.dir" value="webapp/WEB-INF/tags"/>

    <!-- GridSphere build targets -->
    <property name="build.lib" value="${project.build}/lib"/>
    <property name="build.classes" value="${project.build}/classes"/>
    <property name="build.webapp" value="${project.build}/webapp"/>
    <property name="build.docs" value="${project.build}/docs"/>
    <property name="build.javadoc" value="${build.docs}/javadocs"/>
    <property name="build.tests" value="${project.build}/tests"/>
    <property name="build.lib" value="${project.build}/webapp/lib"/>
    <property name="build.dtd" value="${project.build}/webapp/dtd"/>
    <property name="build.tags" value="${project.build}/webapp/tags"/>
    <property name="portlet.tld" value="${project.build}/portlet.tld"/>

    <property environment="env"/>
    
        <fileset id="api.libs" dir="${lib.dir}">
                <include name="*.jar"/>
        </fileset>

    <!-- =================================================================== -->
    <!-- Functions                                                           -->
    <!-- =================================================================== -->
    <target name="setenv" description="Check for libraries and print out config information">

        <!-- Make build directories -->
        <mkdir dir="src"/>
        <mkdir dir="lib"/>
        <mkdir dir="${project.build}"/>
        <mkdir dir="${build.lib}"/>
        <mkdir dir="${build.classes}"/>
        <mkdir dir="${build.webapp}"/>
        <mkdir dir="${build.docs}"/>

        <if>
            <equals arg1="${gridsphere.appserver}" arg2="tomcat"/>
            <then>
                <property name="appserver.home" value="${env.CATALINA_HOME}"/>

                <if>
                    <available file="${appserver.home}/common/lib" type="dir"/>
                    <then>
                        <echo message="Installing for Tomcat 5.x"/>
                        <path id="servletpath">
                            <fileset dir="${appserver.home}/common/lib/">
                                <include name="*.jar"/>
                            </fileset>
                        </path>
                    </then>
                </if>
                <if>
                    <available file="${appserver.home}/lib" type="dir"/>
                    <then>
                        <echo message="Installing for Tomcat 6.x"/>
                        <path id="servletpath">
                            <fileset dir="${appserver.home}/lib/">
                                <include name="*.jar"/>
                            </fileset>
                        </path>
                    </then>
                </if>
            </then>
        </if>

        <if>
            <equals arg1="${gridsphere.appserver}" arg2="jetty"/>
            <then>
                <echo message="Installing for Jetty"/>
                <property name="appserver.home" value="${env.APPSERVER_HOME}"/>
                <path id="servletpath">
                    <fileset file="${appserver.home}/lib/javax.servlet.jar"/>
                    <fileset dir="${appserver.home}/ext/">
                        <exclude name="*.LICENSE"/>
                        <include name="*.jar"/>
                    </fileset>
                </path>
            </then>
        </if>

        <path id="classpath">
            <pathelement location="${build.classes}"/>
            <fileset dir="lib">
                <exclude name="*.LICENSE"/>
                <include name="*.jar"/>
            </fileset>
            <fileset dir="${gridsphere.build}/lib">
                <include name="*.jar"/>
            </fileset>
            <fileset dir="${gridsphere.home}/lib">
                <include name="*.jar"/>
            </fileset>
                <fileset id="spring.libs" dir="${spring.lib.dir}">
                <include name="*.jar"/>
        </fileset>
    
      <fileset id="spring.dtds" dir="${spring.dtd.dir}">
                <include name="*.dtd"/>
        </fileset>

        <fileset id="spring.tlds" dir="${spring.tld.dir}">
                <include name="*.tld"/>
        </fileset>
            <path refid="servletpath"/>
            <pathelement path="${java.class.path}"/>

        </path>

        <echo message="--- Build environment for ${project} ---"/>
        <echo message="--- Flags (Note: If the {property name} is displayed,"/>
        <echo message="           then the component is not present)"/>
        <echo message=""/>

        <echo message="ANT_HOME is set to = ${env.ANT_HOME}"/>
        <echo message="JAVA_HOME is set to = ${env.JAVA_HOME}"/>

        <echo message="GridSphere Webserver is ${gridsphere.appserver}"/>
        <echo message="This project will be deployed to ${appserver.home}/webapps"/>

        <echo message="--- Property values ---"/>
        <echo message="debug=${debug}"/>
        <echo message="deprecation=${deprecation}"/>
        <echo message="optimize=${optimize}"/>
    </target>

    <!-- =================================================================== -->
    <!-- Print usage information                                             -->
    <!-- =================================================================== -->
    <target name="help" description="shows help about useful target">
        <echo message="target                 description"/>
        <echo message="-----------------------------------------------------------------"/>
        <echo message="clean                  Cleans up the build dir                       "/>
        <echo message="compile                Compiles all the code                         "/>
        <echo message="jar                    Create a ${project.name} JAR                  "/>
        <echo message="war                    Create a ${project.name} WAR                  "/>
        <echo message="docs                   Creates ${project.title} Javadoc API          "/>
        <echo message="deploy                 Deploys ${project.title}                      "/>
        <echo message="dist                   Builds a binary ${project.title} distribution "/>
    </target>

    <!-- =================================================================== -->
    <!-- Compiles all source code in distribution                            -->
    <!-- =================================================================== -->
    <target name="compile-all" depends="compile" description="Compiles all source code in distribution"/>

    <!-- =================================================================== -->
    <!-- Compiles source code                                                -->
    <!-- =================================================================== -->
    <target name="compile" depends="setenv" description="Compile project source code">
        <echo>Compiling project source code</echo>
        <javac srcdir="src"
               destdir="${build.classes}"
               classpathref="classpath"
               debug="${debug}"
               optimize="${optimize}"
               deprecation="false"/>
    </target>

    <target name="precompile-jsp" depends="setenv">
        <taskdef name="jspc50" classname="org.apache.jasper.JspC" classpathref="classpath">
        </taskdef>


        <mkdir dir="${project.build}/jsp/source"/>
        <mkdir dir="${project.build}/jsp/classes"/>
        <if>
            <equals arg1="${gridsphere.useprecompiledjsp}" arg2="true"/>
            <then>

                <jspc50 outputDir="${project.build}/jsp/source"
                        webXmlFragment="${project.build}/jsp/web.inc"
                        validateXml="false">
                </jspc50>
            </then>
        </if>


    </target>

    <!-- =================================================================== -->
    <!-- Database stuff                                         -->
    <!-- =================================================================== -->

    <target name="configure-database" depends="setenv">
        <mkdir dir="${appserver.home}/webapps/${project.name}/WEB-INF/persistence/"/>
        <copy overwrite="true" file="webapp/WEB-INF/persistence/hibernate.properties"
              todir="${appserver.home}/webapps/${project.name}/WEB-INF/persistence/"/>
        <pathconvert targetos="windows" dirsep="/" property="cathome">
            <path location="${appserver.home}"/>
        </pathconvert>
        <replace file="${appserver.home}/webapps/${project.name}/WEB-INF/persistence/hibernate.properties"
                 token="@3RDPARTY_WEBAPP@"
                 value="${cathome}/webapps/${project.name}"/>
    </target>

    <target name="create-database" depends="setenv, deploy">
        <echo message="Creating database"/>
        <taskdef name="dbtask"
                 classname="org.gridsphere.tools.DBTask"
                 classpathref="classpath">
            <classpath id="hib.classpth">
                <pathelement location="webapp/WEB-INF/classes/"/>
            </classpath>
        </taskdef>
        <dbtask
                configdir="${appserver.home}/webapps/${project.name}"
                action="CREATE"/>
    </target>

    <target name="update-database" depends="setenv, configure-database, deploy">
        <taskdef name="dbtask"
                 classname="org.gridsphere.tools.DBTask"
                 classpathref="classpath"/>
        <dbtask
                configdir="${appserver.home}/webapps/${project.name}"
                action="UPDATE"/>
    </target>

    <!-- =================================================================== -->
    <!-- Creates all JAR libraries                                           -->
    <!-- =================================================================== -->
    <target name="jar" depends="portlets-jar, services-jar, services-impl-jar" description="Creates project JAR"/>

    <!-- =================================================================== -->
    <!-- Creates a portlet JAR library                                       -->
    <!-- =================================================================== -->
    <target name="portlets-jar" depends="compile" description="Creates portlets JAR">
        <echo>Creating JAR</echo>
        <jar jarfile="${build.lib}/${project.name}.jar" basedir="${build.classes}">
            <include name="**/portlets/**"/>
            <include name="hibernate.cfg.xml"/>
        </jar>
    </target>

    <!-- =================================================================== -->
    <!-- Creates a services JAR library                                      -->
    <!-- =================================================================== -->
    <target name="services-jar" depends="compile" description="Creates services JAR">
        <echo>Creating services JAR</echo>
        <jar jarfile="${build.lib}/${project.name}-services.jar" basedir="${build.classes}">
            <include name="**/services/**"/>
            <exclude name="**/impl/**"/>
        </jar>
    </target>

    <!-- =================================================================== -->
    <!-- Creates a services implementation JAR                               -->
    <!-- =================================================================== -->
    <target name="services-impl-jar" depends="compile" description="Creates services impl JAR">
        <echo>Creating services JAR</echo>
        <jar jarfile="${build.lib}/${project.name}-services-impl.jar" basedir="${build.classes}">
            <include name="**/services/**/impl/**"/>
        </jar>
    </target>

    <!-- =================================================================== -->
    <!-- Cleans everything                                                   -->
    <!-- =================================================================== -->
    <target name="clean" description="Delete classes and existing library">
        <delete quiet="true" dir="${project.build}"/>
        <delete quiet="true" dir="${project.dist}"/>
        <delete quiet="true" file="lib/${project.name}.jar"/>
        <delete quiet="true" file="lib/${project.name}-services.jar"/>
        <delete quiet="true" file="lib/${project.name}-services-impl.jar"/>
    </target>

    <target name="docs" depends="javadocs" description="Create project documentation"/>

    <!-- =================================================================== -->
    <!-- Creates all the API documentation                                   -->
    <!-- =================================================================== -->
    <target name="javadocs" depends="setenv" description="Create Javadocs">
        <echo>Creating Javadocs</echo>
        <delete quiet="true" dir="${build.javadoc}"/>
        <mkdir dir="${build.javadoc}"/>
        <javadoc sourcepath="src"
                 classpathref="classpath"
                 destdir="${build.javadoc}"
                 author="true"
                 version="true"
                 splitindex="true"
                 use="true"
                 maxmemory="180m"
                 windowtitle="${project.title}"
                 doctitle="${project.api}">
            <!-- bottom="Copyright &#169; 2002,2003 GridLab Project. All Rights Reserved."> -->
        </javadoc>
    </target>

    <!-- =================================================================== -->
    <!-- Creates the WAR file                                                -->
    <!-- =================================================================== -->
    <target name="war" depends="jar" description="Create project WAR">
        <echo>Creating project web application WAR</echo>

        <mkdir dir="${project.build}/webapp/WEB-INF/lib"/>
        <mkdir dir="${project.build}/webapp/WEB-INF/classes"/>

        <copy todir="${project.build}/webapp/WEB-INF/lib">
            <fileset dir="${gridsphere.build}/lib/">
                <include name="gridsphere-portletservlet*.jar"/>
            </fileset>
        </copy>

        <copy todir="${project.build}/webapp/WEB-INF/classes">
            <fileset dir="${project.build}/classes/">
                <include name="**/*"/>
            </fileset>
            <fileset dir="lib/"/>
        </copy>

        <war warfile="${project.build}/${project.name}.war" update="true"
             webxml="webapp/WEB-INF/web.xml">
            <fileset dir="webapp/">
                <exclude name="WEB-INF/web.xml"/>
            </fileset>
            <fileset dir="${project.build}/webapp/"/>
        </war>
    </target>

    <!-- =================================================================== -->
    <!-- Deploys portlets to a local server                                  -->
    <!-- =================================================================== -->
    <target name="deploy" depends="jar" description="Deploys portlet to a local server">
        <echo>Deploying project</echo>

        <!-- Copy the gridsphere web app to build directory -->
        <property name="project.webapp" value="${appserver.home}/webapps/${project.name}"/>
        <mkdir dir="${project.webapp}"/>

        <copy overwrite="true" todir="${project.webapp}" encoding="utf-8">
            <fileset dir="webapp"/>
        </copy>

        <mkdir dir="${project.webapp}/WEB-INF/lib"/>

        <copy overwrite="true" todir="${project.webapp}/WEB-INF/lib">
            <fileset dir="${build.lib}">
                <include name="${project.name}.jar"/>
            </fileset>
        </copy>

        <copy todir="${project.webapp}/WEB-INF/lib">
            <fileset dir="${gridsphere.build}/lib/">
                <include name="gridsphere-portletservlet*.jar"/>
                <!--<include name="gridsphere-provider*.jar"/>-->
                <!--<include name="gridsphere-portal*.jar"/>-->
                <!--<exclude name="gridsphere-portal-api*.jar"/>-->
            </fileset>
            <!--<fileset dir="${gridsphere.home}/lib/">-->
            <!--<include name="log4j*.jar"/>-->
            <!--<include name="castor*.jar"/>-->
            <!--<include name="xerces*.jar"/>-->
            <!--<include name="commons-fileupload*.jar"/>-->
            <!--<include name="commons-io*.jar"/>-->
            <!--</fileset>-->
        </copy>

        <if>
            <equals arg1="${project.priority}" arg2=""/>
            <then>
                <touch file="${appserver.home}/webapps/${gridsphere.deploy}/WEB-INF/CustomPortal/portlets/${project.name}"/>
            </then>
            <else>
                <touch file="${appserver.home}/webapps/${gridsphere.deploy}/WEB-INF/CustomPortal/portlets/${project.name}.${project.priority}"/>
            </else>
        </if>

        <copy todir="${project.webapp}/WEB-INF/lib">
            <fileset dir="${build.lib}">
                <include name="${project.name}-services-impl.jar"/>
            </fileset>
            <fileset dir="lib">
                <include name="*.jar"/>
            </fileset>
        </copy>

        <if>
            <equals arg1="${project.shared}" arg2="false"/>
            <then>
                <copy todir="${project.webapp}/WEB-INF/lib" file="${build.lib}/${project.name}-services.jar"/>
            </then>
            <else>
                <copy todir="${appserver.home}/shared/lib" file="${build.lib}/${project.name}-services.jar"/>
            </else>
        </if>

        <antcall target="configure-database"/>
    </target>

    <target name="install" depends="deploy">
        <antcall target="create-database"/>
    </target>

</project>
17291/media/apple/work/gridsphere-3.0.8/projects/bioportlets$