Dakman!  Which is better: 

DocumentRoot/
   |
   |___framework
   |
   |___project_name/
   |      |
   |      |__project_files
   |
   |___index.php

OR

DocumentRoot/
   |
   |___framework documents here
   |
   |___kauri.php <- framework bootstrap file
   |
   |___app/
         |
         |__project_files and shit here