valhallasw@elladan:~/transmission/src$ ./autogen.sh
autoconf-wrapper: unrecognized option -fi
Makefile.am:90: @LTLIBOBJS@ seen but never set in `configure.in'
Makefile.am:90: @LTLIBOBJS@ seen but never set in `configure.in'
automake: Makefile.am: not supported: source file `WIN32-Code/misc.c' is in subdirectory
automake: Makefile.am: not supported: source file `WIN32-Code/win32.c' is in subdirectory
Makefile.am:94: @LTLIBOBJS@ seen but never set in `configure.in'
Makefile.am:94: @LTLIBOBJS@ seen but never set in `configure.in'
automake: Makefile.am: not supported: source file `WIN32-Code/misc.c' is in subdirectory
automake: Makefile.am: not supported: source file `WIN32-Code/win32.c' is in subdirectory
Makefile.am:98: @LTLIBOBJS@ seen but never set in `configure.in'
Makefile.am:98: @LTLIBOBJS@ seen but never set in `configure.in'
autoreconf2.50: automake failed with exit status: 1
Creating aclocal.m4 ...
Running glib-gettextize...  Ignore non-fatal messages.
Copying file mkinstalldirs
Copying file po/Makefile.in.in

Please add the files
  codeset.m4 gettext.m4 glibc21.m4 iconv.m4 isc-posix.m4 lcmessage.m4
  progtest.m4
from the /aclocal directory to your autoconf macro directory
or directly to your aclocal.m4 file.
You will also need config.guess and config.sub, which you can get from
ftp://ftp.gnu.org/pub/gnu/config/.

Making aclocal.m4 writable ...
Running intltoolize...