[user1@master ~]$ module load hdf5/hdf5-openmpi-gnu This module will prepend the hdf5-openmpi-gnu bin and lib directories to the PATH and LD_LIBRARY_PATH environment variables, respectively. [user1@master ~]$ module load mpi/openmpi-interconnects-gnu This module will prepend the openmpi-gnu bin, man and lib directories to the PATH, MANPATH and LD_LIBRARY_PATH environment variables, respectively. [user1@master ~]$ mpirun --machinefile machines --prefix /opt/openmpi/gnu -mca btl openib ph5example -------------------------------------------------------------------------- WARNING: No HCA parameters were found for the HCA that Open MPI detected: Hostname: 172.20.0.1 HCA vendor ID: 0x08f1 HCA vendor part ID: 23044 Default HCA parameters will be used, which may result in lower performance. You can edit any of the files specified by the btl_openib_hca_param_files MCA parameter to set values for your HCA. NOTE: You can turn off this warning by setting the MCA parameter btl_openib_warn_no_hca_params_found to 0. -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: No HCA parameters were found for the HCA that Open MPI detected: Hostname: 172.20.0.2 HCA vendor ID: 0x08f1 HCA vendor part ID: 23044 Default HCA parameters will be used, which may result in lower performance. You can edit any of the files specified by the btl_openib_hca_param_files MCA parameter to set values for your HCA. NOTE: You can turn off this warning by setting the MCA parameter btl_openib_warn_no_hca_params_found to 0. -------------------------------------------------------------------------- -------------------------------- Proc 0: *** testing PHDF5 dataset using split communicators... -------------------------------- -------------------------------- Proc 1: *** testing PHDF5 dataset using split communicators... -------------------------------- -------------------------------- Proc 1: *** testing PHDF5 dataset independent write... -------------------------------- -------------------------------- Proc 0: *** testing PHDF5 dataset independent write... -------------------------------- ADIOI_NFS_OPEN (line 55): **filenoexist ParaEg1.h5f-------------------------------- Proc 0: *** testing PHDF5 dataset collective write... -------------------------------- ADIO_OPEN (line 273): **oremote_fail MPI_FILE_CLOSE (line 51): **iobadfh HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5F.c line 1969 in H5Fcreate(): unable to create file major(04): File interface minor(17): Unable to open file #001: H5F.c line 1726 in H5F_open(): unable to open file major(04): File interface minor(17): Unable to open file #002: H5FD.c line 1045 in H5FD_open(): open failed major(22): Virtual File Layer minor(29): Unable to initialize object #003: H5FDmpio.c line 802 in H5FD_mpio_open(): MPI_File_open failed major(03): Internal HDF5 error minor(78): Some MPI function failed #004: H5FDmpio.c line 802 in H5FD_mpio_open(): MPI_ERR_IO: input/output error major(03): Internal HDF5 error minor(79): MPI Error String HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5D.c line 1099 in H5Dcreate(): not a location ID major(01): Function arguments minor(03): Inappropriate type #001: H5G.c line 1928 in H5G_loc(): invalid object ID major(01): Function arguments minor(05): Bad value HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5D.c line 1099 in H5Dcreate(): not a location ID major(01): Function arguments minor(03): Inappropriate type #001: H5G.c line 1928 in H5G_loc(): invalid object ID major(01): Function arguments minor(05): Bad value HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5D.c line 1266 in H5Dget_space(): not a dataset major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5Shyper.c line 6040 in H5Sselect_hyperslab(): not a data space major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5Dio.c line 650 in H5Dwrite(): not a dataset major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5Dio.c line 650 in H5Dwrite(): not a dataset major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5S.c line 476 in H5Sclose(): not a data space major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5D.c line 1224 in H5Dclose(): not a dataset major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5D.c line 1224 in H5Dclose(): not a dataset major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5F.c line 2565 in H5Fclose(): not a file ID major(01): Function arguments minor(03): Inappropriate type ADIOI_NFS_OPEN (line 55): **filenoexist ParaEg1.h5fMPI_FILE_CLOSE (line 51): **iobadfh HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. #000: H5F.c line 1969 in H5Fcreate(): unable to create file major(04): File interface minor(17): Unable to open file #001: H5F.c line 1726 in H5F_open(): unable to open file major(04): File interface minor(17): Unable to open file #002: H5FD.c line 1045 in H5FD_open(): open failed major(22): Virtual File Layer minor(29): Unable to initialize object #003: H5FDmpio.c line 802 in H5FD_mpio_open(): MPI_File_open failed major(03): Internal HDF5 error minor(78): Some MPI function failed #004: H5FDmpio.c line 802 in H5FD_mpio_open(): MPI_ERR_NO_SUCH_FILE: no such file or directory major(03): Internal HDF5 error minor(79): MPI Error String HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. #000: H5D.c line 1099 in H5Dcreate(): not a location ID major(01): Function arguments minor(03): Inappropriate type #001: H5G.c line 1928 in H5G_loc(): invalid object ID major(01): Function arguments minor(05): Bad value HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. #000: H5D.c line 1099 in H5Dcreate(): not a location ID major(01): Function arguments minor(03): Inappropriate type #001: H5G.c line 1928 in H5G_loc(): invalid object ID major(01): Function arguments minor(05): Bad value HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. #000: H5D.c line 1266 in H5Dget_space(): not a dataset major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. #000: H5Shyper.c line 6040 in H5Sselect_hyperslab(): not a data space major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. #000: H5Dio.c line 650 in H5Dwrite(): not a dataset major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. #000: H5Dio.c line 650 in H5Dwrite(): not a dataset major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. #000: H5S.c line 476 in H5Sclose(): not a data space major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. #000: H5D.c line 1224 in H5Dclose(): not a dataset major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. #000: H5D.c line 1224 in H5Dclose(): not a dataset major(01): Function arguments minor(03): Inappropriate type -------------------------------- Proc 1: *** testing PHDF5 dataset collective write... HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. #000: H5F.c line 2565 in H5Fclose(): not a file ID major(01): Function arguments minor(03): Inappropriate type -------------------------------- -------------------------------- Proc 0: *** testing PHDF5 dataset independent read... -------------------------------- -------------------------------- Proc 1: *** testing PHDF5 dataset independent read... -------------------------------- ADIO_OPEN (line 273): **oremote_fail MPI_FILE_CLOSE (line 51): **iobadfh ADIOI_NFS_OPEN (line 55): **filenoexist ParaEg1.h5fADIOI_NFS_OPEN (line 55): **filenoexist ParaEg1.h5fHDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5F.c line 2049 in H5Fopen(): unable to open file major(04): File interface minor(17): Unable to open file #001: H5F.c line 1726 in H5F_open(): unable to open file major(04): File interface minor(17): Unable to open file #002: H5FD.c line 1045 in H5FD_open(): open failed major(22): Virtual File Layer minor(29): Unable to initialize object #003: H5FDmpio.c line 802 in H5FD_mpio_open(): MPI_File_open failed major(03): Internal HDF5 error minor(78): Some MPI function failed #004: H5FDmpio.c line 802 in H5FD_mpio_open(): MPI_ERR_IO: input/output error major(03): Internal HDF5 error minor(79): MPI Error String HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5D.c line 1163 in H5Dopen(): not a location major(01): Function arguments minor(03): Inappropriate type #001: H5G.c line 1928 in H5G_loc(): invalid object ID major(01): Function arguments minor(05): Bad value HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5D.c line 1163 in H5Dopen(): not a location MPI_FILE_CLOSE (line 51): **iobadfh HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 major(01): Function arguments minor(03): Inappropriate type #001: H5G.c line 1928 in H5G_loc(): invalid object ID major(01): Function arguments minor(05): Bad value HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5D.c line 1266 in H5Dget_space(): not a dataset major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5Shyper.c line 6040 in H5Sselect_hyperslab(): not a data space major(01): Function arguments minor(03): Inappropriate type MPI-process 1. Back trace follows. #000: H5F.c line 2049 in H5Fopen(): unable to open file major(04): File interface minor(17): Unable to open file #001: H5F.c line 1726 in H5F_open(): unable to open file major(04): File interface HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5Dio.c line 562 in H5Dread(): not a dataset major(01): Function arguments minor(03): Inappropriate type minor(17): Unable to open file #002: H5FD.c line 1045 in H5FD_open(): open failed major(22): Virtual File Layer minor(29): Unable to initialize object #003: H5FDmpio.c line 802 in H5FD_mpio_open(): MPI_File_open failed major(03): Internal HDF5 error minor(78): Some MPI function failed #004: H5FDmpio.c line 802 in H5FD_mpio_open(): MPI_ERR_NO_SUCH_FILE: no such file or directory major(03): Internal HDF5 error minor(79): MPI Error String HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. #000: H5D.c line 1163 in H5Dopen(): not a location major(01): Function arguments Dataset Verify failed at [0][0](row 0, col 0): expect 5, got 1 Dataset Verify failed at [0][1](row 0, col 1): expect 6, got 2 minor(03): Inappropriate type Dataset Verify failed at [0][2](row 0, col 2): expect 7, got 3 Dataset Verify failed at [0][3](row 0, col 3): expect 8, got 4 Dataset Verify failed at [0][4](row 0, col 4): expect 9, got 5 Dataset Verify failed at [0][5](row 0, col 5): expect 10, got 6 Dataset Verify failed at [0][6](row 0, col 6): expect 11, got 7 Dataset Verify failed at [0][7](row 0, col 7): expect 12, got 8 Dataset Verify failed at [0][8](row 0, col 8): expect 101, got 9 Dataset Verify failed at [0][9](row 0, col 9): expect 102, got 10 #001: H5G.c line 1928 in H5G_loc(): invalid object ID major(01): Function arguments minor(05): Bad value HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. #000: H5D.c line 1163 in H5Dopen(): not a location major(01): Function arguments minor(03): Inappropriate type [more errors ...] 288 errors found in dataset_vrfy Dataset Verify failed at [0][0](row 0, col 0): expect 5, got 1 Dataset Verify failed at [0][1](row 0, col 1): expect 6, got 2 Dataset Verify failed at [0][2](row 0, col 2): expect 7, got 3 Dataset Verify failed at [0][3](row 0, col 3): expect 8, got 4 Dataset Verify failed at [0][4](row 0, col 4): expect 9, got 5 Dataset Verify failed at [0][5](row 0, col 5): expect 10, got 6 Dataset Verify failed at [0][6](row 0, col 6): expect 11, got 7 #001: H5G.c line 1928 in H5G_loc(): invalid object ID major(01): Function arguments minor(05): Bad value HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. #000: H5D.c line 1266 in H5Dget_space(): not a dataset major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1.HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5Dio.c line 562 in H5Dread(): not a dataset major(01): Function arguments minor(03): Inappropriate type Back trace follows. #000: H5Shyper.c line 6040 in H5Sselect_hyperslab(): not a data space major(01): Function arguments minor(03): Inappropriate type Dataset Verify failed at [0][7](row 0, col 7): expect 12, got 8 Dataset Verify failed at [0][8](row 0, col 8): expect 101, got 9 Dataset Verify failed at [0][9](row 0, col 9): expect 102, got 10 [more errors ...] 288 errors found in dataset_vrfy HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5D.c line 1224 in H5Dclose(): not a dataset major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 #000: H5Dio.c line 562 in H5Dread(): not a dataset major(01): Function arguments minor(03): Inappropriate type MPI-process 0. Back trace follows. #000: H5D.c line 1224 in H5Dclose(): not a dataset major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0. Back trace follows. #000: H5S.c line 476 in H5Sclose(): not a data space major(01): Function arguments Dataset Verify failed at [0][0](row 12, col 0): expect 17, got 1201 Dataset Verify failed at [0][1](row 12, col 1): expect 18, got 1202 Dataset Verify failed at [0][2](row 12, col 2): expect 19, got 1203 Dataset Verify failed at [0][3](row 12, col 3): expect 20, got 1204 minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 0.Dataset Verify failed at [0][4](row 12, col 4): expect 21, got 1205 Dataset Verify failed at [0][5](row 12, col 5): expect 22, got 1206 Dataset Verify failed at [0][6](row 12, col 6): expect 23, got 1207 Dataset Verify failed at [0][7](row 12, col 7): expect 24, got 1208 Dataset Verify failed at [0][8](row 12, col 8): expect 113, got 1209 -------------------------------- Proc 0: *** testing PHDF5 dataset collective read... -------------------------------- Dataset Verify failed at [0][9](row 12, col 9): expect 114, got 1210 [more errors ...] 288 errors found in dataset_vrfy Dataset Verify failed at [0][0](row 12, col 0): expect 17, got 1201 Back trace follows. #000: H5F.c line 2565 in H5Fclose(): not a file ID major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. #000: H5Dio.c line 562 in H5Dread(): not a dataset major(01): Function arguments minor(03): Inappropriate type Dataset Verify failed at [0][1](row 12, col 1): expect 18, got 1202 Dataset Verify failed at [0][2](row 12, col 2): expect 19, got 1203 Dataset Verify failed at [0][3](row 12, col 3): expect 20, got 1204 Dataset Verify failed at [0][4](row 12, col 4): expect 21, got 1205 Dataset Verify failed at [0][5](row 12, col 5): expect 22, got 1206 Dataset Verify failed at [0][6](row 12, col 6): expect 23, got 1207 Dataset Verify failed at [0][7](row 12, col 7): expect 24, got 1208 Dataset Verify failed at [0][8](row 12, col 8): expect 113, got 1209 Dataset Verify failed at [0][9](row 12, col 9): expect 114, got 1210 [more errors ...] 288 errors found in dataset_vrfy HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. #000: H5D.c line 1224 in H5Dclose(): not a dataset major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. #000: H5D.c line 1224 in H5Dclose(): not a dataset major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. #000: H5S.c line 476 in H5Sclose(): not a data space major(01): Function arguments minor(03): Inappropriate type HDF5-DIAG: Error detected in HDF5 library version: 1.6.6 MPI-process 1. Back trace follows. #000: H5F.c line 2565 in H5Fclose(): not a file ID major(01): Function arguments minor(03): Inappropriate type -------------------------------- Proc 1: *** testing PHDF5 dataset collective read... -------------------------------- =================================== PHDF5 tests finished with no errors ===================================