RewriteEngine On

#RewriteCond %{REQUEST_URI} !^/$
#RewriteCond %{DOCUMENT_ROOT}/root%{REQUEST_URI} -d [OR]
RewriteCond %{DOCUMENT_ROOT}/root%{REQUEST_URI} -f
RewriteRule !^root/ /root%{REQUEST_URI} [L]

RewriteCond %{REQUEST_URI} !^/?script/testapp_fastcgi.pl
RewriteRule !^root/ script/testapp_fastcgi.pl%{REQUEST_URI} [L]